Choosing the Right Oligonucleotide Synthesizer for Your Lab

Written by Harold Devoz | Feb 27, 2026 7:18:01 PM

Introduction

Not all oligonucleotide synthesizers are created equal. Selecting the right system depends on throughput, oligo complexity, scale, and future growth plans.

Key Questions to Ask Before Buying

  • How many oligos do you need per run and per week?
  • What quantities and lengths are required?
  • Do you need DNA, RNA, LNA, or modified oligos?
  • Are fast turnaround times critical?
  • Do you need plate-based or column-based synthesis?

Column-Based vs Plate-Based Systems

Column-Based Synthesizers

  • Ideal for custom, longer, or modified oligos
  • Higher synthesis scales
  • Greater flexibility

Plate-Based Synthesizers

  • Best for high-throughput screening
  • Lower synthesis scales
  • Faster batch processing

Scaling for the Future

Choosing a system that meets today’s needs and tomorrow’s growth prevents costly upgrades later. Factors like amidite positions, reagent capacity, and monitoring features should be evaluated carefully.

👉 Next up: What your lab actually needs — from space and ventilation to safety and compliance.