---
title: Choosing the Right Oligonucleotide Synthesizer for Your Lab
description: Choosing the Right Oligonucleotide Synthesizer for Your Lab
image: https://blog.sierrabio.com/hubfs/Large-Scale-Apparatus.jpg
---

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# Choosing the Right Oligonucleotide Synthesizer for Your Lab

![Harold Devoz](https://app.hubspot.com/settings/avatar/d41d8cd98f00b204e9800998ecf8427e)

 Harold Devoz

February 27, 2026

### Introduction

Not all oligonucleotide synthesizers are created equal. Selecting the right system depends on throughput, oligo complexity, scale, and future growth plans.

### Key Questions to Ask Before Buying

- How many oligos do you need per run and per week?
- What quantities and lengths are required?
- Do you need DNA, RNA, LNA, or modified oligos?
- Are fast turnaround times critical?
- Do you need plate-based or column-based synthesis?

### Column-Based vs Plate-Based Systems

**Column-Based Synthesizers**

- Ideal for custom, longer, or modified oligos
- Higher synthesis scales
- Greater flexibility

**Plate-Based Synthesizers**

- Best for high-throughput screening
- Lower synthesis scales
- Faster batch processing

### Scaling for the Future

Choosing a system that meets today’s needs *and* tomorrow’s growth prevents costly upgrades later. Factors like amidite positions, reagent capacity, and monitoring features should be evaluated carefully.

👉 **Next up:** What your lab actually needs — from space and ventilation to safety and compliance.

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## Keep reading

### [![](https://blog.sierrabio.com/hs-fs/hubfs/business%20graph%20of%20success%20in%20blues%20and%20black%20colours%20with%20nice%20light%20effects.jpeg?width=1000&height=727&name=business%20graph%20of%20success%20in%20blues%20and%20black%20colours%20with%20nice%20light%20effects.jpeg) From Synthesis to Final Product: Yield, Deprotection, and Purification Explained](https://blog.sierrabio.com/from-synthesis-to-final-product-yield-deprotection-and-purification-explained)

### [![](https://blog.sierrabio.com/hs-fs/hubfs/Chemist%20holding%20up%20beaker%20of%20green%20chemical%20in%20the%20laboratory.jpeg?width=1000&height=667&name=Chemist%20holding%20up%20beaker%20of%20green%20chemical%20in%20the%20laboratory.jpeg) Lab Setup, Safety, and Compliance for In-House Oligo Synthesis](https://blog.sierrabio.com/lab-setup-safety-and-compliance-for-in-house-oligo-synthesis)

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